I recently reviewed an article for a colleague at Colorado School of Mines, and our advice may sound redundant but it reinforces certain points that I think will help as you think about teaching in the margins. The specific advice offered to geoscientists includes these five key points about commenting.
Jon A. Leydens and Paul Santi, "Optimizing Faculty Use of Writing as a Learning Tool in Geoscience Education," The Journal of Geoscience Education.